trans.misc
Class CalcGCRatiosFromIntervals

java.lang.Object
  trans.misc.CalcGCRatiosFromIntervals

public class CalcGCRatiosFromIntervals

extends java.lang.Object

Parse out treatment and control oligo info from intervals, calculate GC and ratios to look for bias.

Constructor Summary

CalcGCRatiosFromIntervals()

Method Summary

static void	main(java.lang.String[] args)
static void	printCalculations(java.util.ArrayList doubleAL, int gc) Prints %GC, Mean, 3xStdErr

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CalcGCRatiosFromIntervals

public CalcGCRatiosFromIntervals()

Method Detail

main

public static void main(java.lang.String[] args)

printCalculations

public static void printCalculations(java.util.ArrayList doubleAL,
                                     int gc)

Prints %GC, Mean, 3xStdErr