trans.misc
Class CalcGCAndTransform

java.lang.Object
  trans.misc.CalcGCAndTransform

public class CalcGCAndTransform

extends java.lang.Object

Parses out treatment and control oligo info from intervals, calculate GC and transform ratios based on GC corrector, see TransformRatios.

Constructor Summary

CalcGCAndTransform()

Method Summary

static void	main(java.lang.String[] args)
static void	printCalculations(java.util.ArrayList doubleAL, int gc) Prints %GC, Mean, 3xStdErr

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CalcGCAndTransform

public CalcGCAndTransform()

Method Detail

main

public static void main(java.lang.String[] args)

printCalculations

public static void printCalculations(java.util.ArrayList doubleAL,
                                     int gc)

Prints %GC, Mean, 3xStdErr