trans.anno
Class MergeRegions

java.lang.Object
  trans.anno.MergeRegions

public class MergeRegions

extends java.lang.Object

Takes several tab delimited region files (chrom, start, stop, ...), creates the union and writes to disk. Assumes the first base is zero, and the stop/end of a region is inclusive thus length = end-start+1 . Enter a name of a directory containing the files.

Constructor Summary

MergeRegions()

Method Summary

static void	main(java.lang.String[] args)
static void	print(java.lang.String chromosome, boolean[] bps, java.io.PrintWriter out)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MergeRegions

public MergeRegions()

Method Detail

main

public static void main(java.lang.String[] args)

print

public static void print(java.lang.String chromosome,
                         boolean[] bps,
                         java.io.PrintWriter out)