A B C D E F G H I J K L M N O P Q R S T U V W X Z

Q

QualityFileParser - class util.bio.parsers.QualityFileParser.

This class will read in combine quality files associated with raw sequencing results, skips blank lines, parses off the > character.

QualityFileParser(String) - Constructor for class util.bio.parsers.QualityFileParser

Quantile - class trans.cel.Quantile.

Class holding info relating to one quantile value.

Quantile(int, float) - Constructor for class trans.cel.Quantile

QuantileNormalization - class trans.cel.QuantileNormalization.

Performs quantile normalization on arrays of double values.

QuantileNormalization() - Constructor for class trans.cel.QuantileNormalization

QueryStringAuthGenerator - class com.amazon.s3.QueryStringAuthGenerator.

This class mimics the behavior of AWSAuthConnection, except instead of actually performing the operation, QueryStringAuthGenerator will return URLs with query string parameters that can be used to do the same thing.

QueryStringAuthGenerator(String, String) - Constructor for class com.amazon.s3.QueryStringAuthGenerator

QueryStringAuthGenerator(String, String, boolean) - Constructor for class com.amazon.s3.QueryStringAuthGenerator

QueryStringAuthGenerator(String, String, boolean, String) - Constructor for class com.amazon.s3.QueryStringAuthGenerator

QueryStringAuthGenerator(String, String, boolean, String, int) - Constructor for class com.amazon.s3.QueryStringAuthGenerator

quantifyItems() - Method in class util.bio.parsers.gff.GffParser

quantileNormalize() - Method in class trans.cel.QuantileNormalization

Performs a median scaling then quantile normalization of the loaded float[replicas][intensities].

quartiles(float[]) - Static method in class util.gen.Num

Calculates the Q1,Q2,and Q3 (25th, 50th, and 75th percentile).

queryOrder() - Method in class util.apps.Flash

queryShuffle() - Method in class util.apps.Flash