Uses of Class
expr.ExpressedGene

Packages that use ExpressedGene

expr	Classes and tools related to expression array analysis.

Uses of ExpressedGene in expr

Methods in expr that return ExpressedGene

static ExpressedGene[][]	ExpressedGene.splitByChromosome(ExpressedGene[] exprGenes) Splits a ExpressedGene[] by chromosome to ExpressedGene[chrom][lines].
ExpressedGene[][]	CorrelationMaps.window(ExpressedGene[] ex) Splits a chromosome of ExpressedGenes into windows based on the windowSize and minNumberGenes
ExpressedGene[]	CorrelationMaps.makeRankedFloatArrays(ExpressedGene[] ex) Makes and places RankedFloatArrays in each ExpressedGene, also nulls the ExpressedGene.values.
static ExpressedGene[]	CorrelationMaps.parseGeneFile(java.io.File geneFile) Converts a tab delimited file of (name chr start stop val1 val2 ...) into an ExpressedGene[]

Methods in expr with parameters of type ExpressedGene

static ExpressedGene[][]	ExpressedGene.splitByChromosome(ExpressedGene[] exprGenes) Splits a ExpressedGene[] by chromosome to ExpressedGene[chrom][lines].
float	CorrelationMaps.pairwiseCorrelationScore(ExpressedGene[] ex) Average coorelation coefficient * square root of number of genes.
ExpressedGene[][]	CorrelationMaps.window(ExpressedGene[] ex) Splits a chromosome of ExpressedGenes into windows based on the windowSize and minNumberGenes
ExpressedGene[]	CorrelationMaps.makeRankedFloatArrays(ExpressedGene[] ex) Makes and places RankedFloatArrays in each ExpressedGene, also nulls the ExpressedGene.values.