expr
Class ExpressedGene

java.lang.Object
  expr.ExpressedGene

All Implemented Interfaces:

java.lang.Comparable

public class ExpressedGene

extends java.lang.Object

implements java.lang.Comparable

Constructor Summary

ExpressedGene(java.lang.String name, Coordinates coordinates, float[] values)

Method Summary

int	compareTo(java.lang.Object other) Sorts by Coordinates
Coordinates	getCoordinates()
java.lang.String	getName()
RankedFloatArray	getRfa()
float[]	getValues()
void	setRfa(RankedFloatArray rfa)
void	setValues(float[] values)
static ExpressedGene[][]	splitByChromosome(ExpressedGene[] exprGenes) Splits a ExpressedGene[] by chromosome to ExpressedGene[chrom][lines].
java.lang.String	toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ExpressedGene

public ExpressedGene(java.lang.String name,
                     Coordinates coordinates,
                     float[] values)

Method Detail

toString

public java.lang.String toString()

compareTo

public int compareTo(java.lang.Object other)

Sorts by Coordinates

Specified by:

compareTo in interface java.lang.Comparable

splitByChromosome

public static ExpressedGene[][] splitByChromosome(ExpressedGene[] exprGenes)

Splits a ExpressedGene[] by chromosome to ExpressedGene[chrom][lines]. Assumes the ExpressedGene[] is sorted by chromosome!

getCoordinates

public Coordinates getCoordinates()

getName

public java.lang.String getName()

getValues

public float[] getValues()

getRfa

public RankedFloatArray getRfa()

setRfa

public void setRfa(RankedFloatArray rfa)

setValues

public void setValues(float[] values)