trans.tpmap
Class MapFeature

java.lang.Object
  trans.tpmap.MapFeature

All Implemented Interfaces:

java.lang.Comparable, java.io.Serializable

public class MapFeature

extends java.lang.Object

implements java.lang.Comparable, java.io.Serializable

Tpmap line broken into some components, chromosome, start, pmX, pmY, and optionally, mmX, mmY. No getters or setters to minimize size and increase spead recall.

See Also:

Serialized Form

Field Summary

java.lang.String	chromosome
int	matches
int	mmX
int	mmY
int	pmX
int	pmY
static long	serialVersionUID
int	start

Constructor Summary

MapFeature(java.lang.String tpmapLine)
Constructor - bpmapLine - seq ori chrom start pmX pmY mmX mmY, (mm coords are optional).

Method Summary

int	compareTo(java.lang.Object obj) Sorts by chromosome and then position.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

serialVersionUID

public static final long serialVersionUID

See Also:

Constant Field Values

chromosome

public java.lang.String chromosome

matches

public int matches

start

public int start

pmX

public int pmX

pmY

public int pmY

mmX

public int mmX

mmY

public int mmY

Constructor Detail

MapFeature

public MapFeature(java.lang.String tpmapLine)

Constructor - bpmapLine - seq ori chrom start pmX pmY mmX mmY, (mm coords are optional).

Method Detail

compareTo

public int compareTo(java.lang.Object obj)

Sorts by chromosome and then position.

Specified by:

compareTo in interface java.lang.Comparable