Uses of Class
meme.MotifHit

Packages that use MotifHit
meme Wrapper for meme tweaked for processing multiple rounds of SELEX oligos. 
 

Uses of MotifHit in meme
 

Methods in meme that return MotifHit
 MotifHit[] MotifScanner.scoreSequence(double cutOff, java.lang.String seq)
          Returns an array of MotifHits that are > or = to the loglikelihood cutOff.
 

Methods in meme with parameters of type MotifHit
static int MotifScanner.calculateMaxCluster(MotifHit[] hits, int window)
          Calculates the maximum number of hits that occur within a given window size.