util.bio.xamer
Class Xamer

java.lang.Object
  util.bio.xamer.Xamer

public class Xamer

extends java.lang.Object

Xamer counting related to SELEX.

Constructor Summary

Xamer()

Method Summary

void	calculateHitsPerRound()
void	calculatePercentHitsPerRound(int[] totals)
int[]	getHitsPerRound()
Xamer	getRevCompRef()
java.util.ArrayList	getSelexOligos()
java.lang.String	getXamer()
boolean	isPrintMe()
void	setPrintMe(boolean b)
void	setRevCompRef(Xamer xamer)
void	setSelexOligos(java.util.ArrayList list)
void	setXamer(java.lang.String string)
java.lang.String	toStringBarGraph(int[] totals) Run pairwise comparisons between percentHitsPerRound if any round is less than the others return true public boolean isEnriched(){ int tester =0; int len = percentHitsPerRound.length; for (int i=0; i
java.lang.String	toStringPercent(int[] totals)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Xamer

public Xamer()

Method Detail

toStringBarGraph

public java.lang.String toStringBarGraph(int[] totals)

Run pairwise comparisons between percentHitsPerRound if any round is less than the others return true public boolean isEnriched(){ int tester =0; int len = percentHitsPerRound.length; for (int i=0; i

toStringPercent

public java.lang.String toStringPercent(int[] totals)

calculatePercentHitsPerRound

public void calculatePercentHitsPerRound(int[] totals)

calculateHitsPerRound

public void calculateHitsPerRound()

getHitsPerRound

public int[] getHitsPerRound()

getSelexOligos

public java.util.ArrayList getSelexOligos()

setSelexOligos

public void setSelexOligos(java.util.ArrayList list)

getXamer

public java.lang.String getXamer()

setXamer

public void setXamer(java.lang.String string)

getRevCompRef

public Xamer getRevCompRef()

setRevCompRef

public void setRevCompRef(Xamer xamer)

isPrintMe

public boolean isPrintMe()

setPrintMe

public void setPrintMe(boolean b)