util.bio.annotation
Class GenericFeature

java.lang.Object
  util.bio.annotation.GenericFeature

All Implemented Interfaces:

java.lang.Comparable

public class GenericFeature

extends java.lang.Object

implements java.lang.Comparable

Class to hold user defined gff items like CRMs, enhancers, unpublished single track notation.

Constructor Summary

GenericFeature(Gff3Feature f)

GenericFeature(GffFeature gffFeature)

Method Summary

int	compareTo(java.lang.Object other)
java.lang.String	getAttributes()
int	getEnd()
java.lang.String	getFeatureType()
java.lang.String	getName()
int	getOrientation()
double	getScore()
int	getStart()
java.lang.String	getStrand()
int	getTrackNumber()
void	setTrackNumber(int i)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GenericFeature

public GenericFeature(GffFeature gffFeature)

GenericFeature

public GenericFeature(Gff3Feature f)

Method Detail

compareTo

public int compareTo(java.lang.Object other)

Specified by:

compareTo in interface java.lang.Comparable

getFeatureType

public java.lang.String getFeatureType()

getOrientation

public int getOrientation()

getTrackNumber

public int getTrackNumber()

setTrackNumber

public void setTrackNumber(int i)

getName

public java.lang.String getName()

getScore

public double getScore()

getAttributes

public java.lang.String getAttributes()

getStrand

public java.lang.String getStrand()

getEnd

public int getEnd()

getStart

public int getStart()