selex
Class SubSeq

java.lang.Object
  selex.SubSeq

public class SubSeq

extends java.lang.Object

Holds information related to a particular parsed SELEX oligo.

Constructor Summary

SubSeq(java.lang.String sequence, int[] qualityScores, SelexParams SP, SeqRead srObjectRef)

Method Summary

int	getLength()
int[]	getQualScores()
java.lang.String	getSeq()
SeqRead	getSeqRead()
java.lang.String	getSubSeq()
void	printSubSeq()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SubSeq

public SubSeq(java.lang.String sequence,
              int[] qualityScores,
              SelexParams SP,
              SeqRead srObjectRef)

Method Detail

getSeq

public java.lang.String getSeq()

getSubSeq

public java.lang.String getSubSeq()

getLength

public int getLength()

getQualScores

public int[] getQualScores()

getSeqRead

public SeqRead getSeqRead()

printSubSeq

public void printSubSeq()