gata.aligner
Class Seqs

java.lang.Object
  gata.aligner.Seqs

public class Seqs

extends java.lang.Object

Author:

Nix Object representing the two user input sequences with methods to fire the multiFastaParsers. *

Constructor Summary

Seqs(AlignParams ap, MultiFastaParser ref, MultiFastaParser comp, int index)

Method Summary

LocalAlignment[]

makeLocalAlignments(java.util.ArrayList data)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Seqs

public Seqs(AlignParams ap,
            MultiFastaParser ref,
            MultiFastaParser comp,
            int index)

Method Detail

makeLocalAlignments

public LocalAlignment[] makeLocalAlignments(java.util.ArrayList data)