gata.aligner
Class AlignerThread

java.lang.Object
  java.lang.Thread
      gata.aligner.AlignerThread

All Implemented Interfaces:

java.lang.Runnable

public class AlignerThread

extends java.lang.Thread

Author:

nix Threaded version of primary GATAligner methods to actually perform and save the alignment. Updates the progress monitor.

Field Summary

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

AlignerThread(javax.swing.ProgressMonitor pm, AlignerInputForm aif)

Method Summary

void	run()
boolean	setProgMon(java.lang.String newNote, int progress, javax.swing.ProgressMonitor pm)

Methods inherited from class java.lang.Thread

activeCount, checkAccess, countStackFrames, currentThread, destroy, dumpStack, enumerate, getContextClassLoader, getName, getPriority, getThreadGroup, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setName, setPriority, sleep, sleep, start, stop, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

AlignerThread

public AlignerThread(javax.swing.ProgressMonitor pm,
                     AlignerInputForm aif)

Method Detail

run

public void run()

setProgMon

public boolean setProgMon(java.lang.String newNote,
                          int progress,
                          javax.swing.ProgressMonitor pm)