util.bio.converters
Class AlignedBaseCounter

java.lang.Object
  util.bio.converters.AlignedBaseCounter

public class AlignedBaseCounter

extends java.lang.Object

Counts and parses the bases in a multiple alignment where each string is broken into three sections like gatcc GGCCAATT cgatcca, ccat GGCCAATT cctttt, like the output from meme the central portion is aligned, the left and right flanks are not.

Constructor Summary

AlignedBaseCounter()

Method Summary

static void

main(java.lang.String[] args)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AlignedBaseCounter

public AlignedBaseCounter()

Method Detail

main

public static void main(java.lang.String[] args)