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Packages that use trans.tpmap | |
trans.anno | For associating intervals, binding regions, and binding peaks with GFF annotation. |
trans.cel | Apps and methods for manipulating cel files. |
trans.tpmap | For maping, filtering, and calculating statistics about text version bpmap files. |
Classes in trans.tpmap used by trans.anno | |
TPMapLine
Minimal tpmap line, chrom, start, nothing else. |
Classes in trans.tpmap used by trans.cel | |
IntensityFeature
Minimal info about a feature for combining multiple chips together. |
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MapFeature
Tpmap line broken into some components, chromosome, start, pmX, pmY, and optionally, mmX, mmY. |
Classes in trans.tpmap used by trans.tpmap | |
BlastFilterResult
Container for a blast result: chromosome, numMatches, exactMatches, oneBPMismatches, startExactMatch. |
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MapFeature
Tpmap line broken into some components, chromosome, start, pmX, pmY, and optionally, mmX, mmY. |
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TPMapFeature
Container for info about a particular oligo feature from a tpmap file. |
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TPMapLine
Minimal tpmap line, chrom, start, nothing else. |
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