Uses of Package
trans.tpmap

Packages that use trans.tpmap
trans.anno For associating intervals, binding regions, and binding peaks with GFF annotation. 
trans.cel Apps and methods for manipulating cel files. 
trans.tpmap For maping, filtering, and calculating statistics about text version bpmap files. 
 

Classes in trans.tpmap used by trans.anno
TPMapLine
          Minimal tpmap line, chrom, start, nothing else.
 

Classes in trans.tpmap used by trans.cel
IntensityFeature
          Minimal info about a feature for combining multiple chips together.
MapFeature
          Tpmap line broken into some components, chromosome, start, pmX, pmY, and optionally, mmX, mmY.
 

Classes in trans.tpmap used by trans.tpmap
BlastFilterResult
          Container for a blast result: chromosome, numMatches, exactMatches, oneBPMismatches, startExactMatch.
MapFeature
          Tpmap line broken into some components, chromosome, start, pmX, pmY, and optionally, mmX, mmY.
TPMapFeature
          Container for info about a particular oligo feature from a tpmap file.
TPMapLine
          Minimal tpmap line, chrom, start, nothing else.