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See:
Description
Class Summary | |
AverageACels | Averages two serialized float[][]s, like xxx.cela files, from the CelFileConverter app. |
AveragePCels | Averages serialized float[]s, like xxx.celp files, from the CelProcessor app. |
CelFileConverter | Saves text cel files as serialized float[][]s for downstream use by TiMAT applications. |
CelLine | Class for holding info about a text cel file line, enables sorting after rotation. |
CelMapper | Saves float[]s of intensity values for each cel file ordered by the tpmapFeature file. |
CelPHistogram | |
CelProcessor | Application to process '.cela' files, wrapper for CelMapper ,
QuantileNormalization . |
ChromosomeIndex | Use to keep track of intensities in a array, their chromosome name, and start stop indexes. |
ComparatorMultiSetQuantile | For sorting MultiSetQuantile objects by value or chromosome number and position |
ComparatorQuantile | For sorting ComparatorQuantile objects by value or chromosome number and position |
ControlStats | |
ConvertTVSToCelps | Converts a tsv file to xxx.celp files (float[]s) linked to the tpmap. |
MakeChromosomeSets | |
MultiSetQuantile | Class holding info relating to one quantile value. |
Quantile | Class holding info relating to one quantile value. |
QuantileNormalization | Performs quantile normalization on arrays of double values. |
RotateCelFile | |
SplineScalar | Generates multiplicative scalars based on a set of points using a combination of a cubic spline for values within the provided points and linear regression for points outside the value range. |
StatIntensityFeatureArray |
Apps and methods for manipulating cel files.
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