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Packages that use trans.anno | |
trans.anno | For associating intervals, binding regions, and binding peaks with GFF annotation. |
util.bio.parsers | Parsers and extractors, fasta, quality, text, gff.... |
Classes in trans.anno used by trans.anno | |
BindingRegion
For holding information about a genomic interval, what genes are up, down, overlap, or contain this genomic inteval. |
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RandomRegions
Use to generate random regions of a defined length from a file of regions (chrom, start, stop). |
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Region
Represents a genomic region. |
Classes in trans.anno used by util.bio.parsers | |
BindingRegion
For holding information about a genomic interval, what genes are up, down, overlap, or contain this genomic inteval. |
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