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Packages that use AnnoSpecParams | |
gata.geneGlyphs | For representing annotation, scale bars, and generic tracks. |
gata.main | Main app, utility, and params for GATAPlotter. |
gata.menu | GATAPlotter menus, panels, and frames. |
gata.plotter | GATAPlotter primary panel, sliders, tools, and conservation panels. |
Uses of AnnoSpecParams in gata.geneGlyphs |
Constructors in gata.geneGlyphs with parameters of type AnnoSpecParams | |
TransGrpGlyph(TransGroup transGrp,
GATAParams gataParams,
AnnoSpecParams annoParams)
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ScaleBar(AnnoSpecParams annoParams,
GATAParams gataParams)
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GlyphPanel(AnnoSpecParams annoParams,
GATAParams gataParams)
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GeneRepGlyph(GeneRep geneRep,
GATAParams gataParams,
AnnoSpecParams annoParams)
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Annotation(AnnoSpecParams annoParams,
GATAParams gataParams)
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Uses of AnnoSpecParams in gata.main |
Methods in gata.main that return AnnoSpecParams | |
AnnoSpecParams |
GATAParams.getCompAnnoSpecParams()
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AnnoSpecParams |
GATAParams.getRefAnnoSpecParams()
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Methods in gata.main with parameters of type AnnoSpecParams | |
void |
PlotterPreferences.setAnnoScaleDefaults(AnnoSpecParams asp)
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void |
GATAPlotter.makeAnnotation(AnnoSpecParams annoParams)
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void |
GATAParams.setCompAnnoSpecParams(AnnoSpecParams params)
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void |
GATAParams.setRefAnnoSpecParams(AnnoSpecParams params)
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Uses of AnnoSpecParams in gata.menu |
Methods in gata.menu with parameters of type AnnoSpecParams | |
void |
GATAFrame.completeAnnotationMenu(boolean gffRefPres,
boolean gffCompPres,
AnnoSpecParams refParams,
AnnoSpecParams compParams)
must be called after the initial creation when the user has possibly loaded generic annotation |
void |
GATAFrame.reallyRedrawAnnotationPanel(AnnoSpecParams asp)
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Uses of AnnoSpecParams in gata.plotter |
Methods in gata.plotter with parameters of type AnnoSpecParams | |
void |
AlignPanel.redrawGlyphPanel(AnnoSpecParams asp)
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