Uses of Class
gata.main.AnnoSpecParams

Packages that use AnnoSpecParams
gata.geneGlyphs For representing annotation, scale bars, and generic tracks. 
gata.main Main app, utility, and params for GATAPlotter. 
gata.menu GATAPlotter menus, panels, and frames. 
gata.plotter GATAPlotter primary panel, sliders, tools, and conservation panels. 
 

Uses of AnnoSpecParams in gata.geneGlyphs
 

Constructors in gata.geneGlyphs with parameters of type AnnoSpecParams
TransGrpGlyph(TransGroup transGrp, GATAParams gataParams, AnnoSpecParams annoParams)
           
ScaleBar(AnnoSpecParams annoParams, GATAParams gataParams)
           
GlyphPanel(AnnoSpecParams annoParams, GATAParams gataParams)
           
GeneRepGlyph(GeneRep geneRep, GATAParams gataParams, AnnoSpecParams annoParams)
           
Annotation(AnnoSpecParams annoParams, GATAParams gataParams)
           
 

Uses of AnnoSpecParams in gata.main
 

Methods in gata.main that return AnnoSpecParams
 AnnoSpecParams GATAParams.getCompAnnoSpecParams()
           
 AnnoSpecParams GATAParams.getRefAnnoSpecParams()
           
 

Methods in gata.main with parameters of type AnnoSpecParams
 void PlotterPreferences.setAnnoScaleDefaults(AnnoSpecParams asp)
           
 void GATAPlotter.makeAnnotation(AnnoSpecParams annoParams)
           
 void GATAParams.setCompAnnoSpecParams(AnnoSpecParams params)
           
 void GATAParams.setRefAnnoSpecParams(AnnoSpecParams params)
           
 

Uses of AnnoSpecParams in gata.menu
 

Methods in gata.menu with parameters of type AnnoSpecParams
 void GATAFrame.completeAnnotationMenu(boolean gffRefPres, boolean gffCompPres, AnnoSpecParams refParams, AnnoSpecParams compParams)
          must be called after the initial creation when the user has possibly loaded generic annotation
 void GATAFrame.reallyRedrawAnnotationPanel(AnnoSpecParams asp)
           
 

Uses of AnnoSpecParams in gata.plotter
 

Methods in gata.plotter with parameters of type AnnoSpecParams
 void AlignPanel.redrawGlyphPanel(AnnoSpecParams asp)