bioroot.plasmid
Class PlasmidSpreadSheet
java.lang.Object
javax.servlet.GenericServlet
javax.servlet.http.HttpServlet
bioroot.plasmid.PlasmidSpreadSheet
- All Implemented Interfaces:
- java.io.Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig
- public class PlasmidSpreadSheet
- extends javax.servlet.http.HttpServlet
- Author:
- nix
- See Also:
- Serialized Form
Method Summary |
void |
doGet(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response)
|
void |
doPost(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response)
|
static PlasmidBean[] |
fetchPlasmidBeans(java.lang.String sql,
DBUtil bioRoot)
Build PlasmidBean[] from Plasmid table in database. |
static java.lang.String |
fetchPlasmidTableRows(UserBean userBean,
PlasmidBean[] beans,
int[] startStop,
DBUtil bioRoot,
boolean checked,
boolean allTabs)
Returns table rows for every oligo according to a Preference, if allTabs==true, then all features are
returned in a tab delimited format, otherwise its HTML. |
static void |
makeAndSetPlasmidBeans(javax.servlet.http.HttpSession session,
DBUtil bioRoot,
UserBean userBean)
Makes an array of PlasmidBeans based on Users PlasmidPreferences and sets them in the session. |
static PlasmidBean[] |
orderPlasmids(java.lang.String featureName,
UserBean userBean,
PlasmidBean[] beans,
DBUtil bioRoot)
Orders plasmids, sort of nasty, can't figure another way, reflection is way too slow. |
Methods inherited from class javax.servlet.http.HttpServlet |
service |
Methods inherited from class javax.servlet.GenericServlet |
destroy, getInitParameter, getInitParameterNames, getServletConfig, getServletContext, getServletInfo, getServletName, init, init, log, log |
Methods inherited from class java.lang.Object |
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
PlasmidSpreadSheet
public PlasmidSpreadSheet()
doGet
public void doGet(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response)
throws javax.servlet.ServletException,
java.io.IOException
- Throws:
javax.servlet.ServletException
java.io.IOException
doPost
public void doPost(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response)
throws javax.servlet.ServletException,
java.io.IOException
- Throws:
javax.servlet.ServletException
java.io.IOException
makeAndSetPlasmidBeans
public static void makeAndSetPlasmidBeans(javax.servlet.http.HttpSession session,
DBUtil bioRoot,
UserBean userBean)
- Makes an array of PlasmidBeans based on Users PlasmidPreferences and sets them in the session.
fetchPlasmidTableRows
public static java.lang.String fetchPlasmidTableRows(UserBean userBean,
PlasmidBean[] beans,
int[] startStop,
DBUtil bioRoot,
boolean checked,
boolean allTabs)
- Returns table rows for every oligo according to a Preference, if allTabs==true, then all features are
returned in a tab delimited format, otherwise its HTML. Set startStop to 0,0 if you want everything.
fetchPlasmidBeans
public static PlasmidBean[] fetchPlasmidBeans(java.lang.String sql,
DBUtil bioRoot)
- Build PlasmidBean[] from Plasmid table in database.
orderPlasmids
public static PlasmidBean[] orderPlasmids(java.lang.String featureName,
UserBean userBean,
PlasmidBean[] beans,
DBUtil bioRoot)
- Orders plasmids, sort of nasty, can't figure another way, reflection is way too slow.